Unraveling new genes associated with seed development and metabolism in Bixa orellana L. by expressed sequence tag (EST) analysis.
Identifieur interne : 000246 ( Main/Exploration ); précédent : 000245; suivant : 000247Unraveling new genes associated with seed development and metabolism in Bixa orellana L. by expressed sequence tag (EST) analysis.
Auteurs : Virgínia L F. Soares [Brésil] ; Simone M. Rodrigues ; Tahise M. De Oliveira ; Talisson O. De Queiroz ; Lívia S. Lima ; Braz T. Hora-Júnior ; Karina P. Gramacho ; Fabienne Micheli ; Júlio C M. Cascardo ; Wagner C. Otoni ; Abelmon S. Gesteira ; Marcio G C. CostaSource :
- Molecular biology reports [ 1573-4978 ] ; 2011.
Descripteurs français
- KwdFr :
- Analyse de séquence d'ADN (MeSH), Banque de gènes (MeSH), Bixaceae (génétique), Dioxygenases (génétique), Facteurs temps (MeSH), Famille multigénique (MeSH), Graines (métabolisme), Gènes de plante (MeSH), Methyltransferases (génétique), Modèles génétiques (MeSH), Phylogenèse (MeSH), Protéines végétales (génétique), RT-PCR (MeSH), Étiquettes de séquences exprimées (MeSH).
- MESH :
English descriptors
- KwdEn :
- Bixaceae (genetics), Dioxygenases (genetics), Expressed Sequence Tags (MeSH), Gene Library (MeSH), Genes, Plant (MeSH), Methyltransferases (genetics), Models, Genetic (MeSH), Multigene Family (MeSH), Phylogeny (MeSH), Plant Proteins (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Seeds (metabolism), Sequence Analysis, DNA (MeSH), Time Factors (MeSH).
- MESH :
- chemical , genetics : Dioxygenases, Methyltransferases, Plant Proteins.
- genetics : Bixaceae.
- metabolism : Seeds.
- Expressed Sequence Tags, Gene Library, Genes, Plant, Models, Genetic, Multigene Family, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Time Factors.
Abstract
The tropical tree Bixa orellana L. produces a range of secondary metabolites which biochemical and molecular biosynthesis basis are not well understood. In this work we have characterized a set of ESTs from a non-normalized cDNA library of B. orellana seeds to obtain information about the main developmental and metabolic processes taking place in developing seeds and their associated genes. After sequencing a set of randomly selected clones, most of the sequences were assigned with putative functions based on similarity, GO annotations and protein domains. The most abundant transcripts encoded proteins associated with cell wall (prolyl 4-hydroxylase), fatty acid (acyl carrier protein), and hormone/flavonoid (2OG-Fe oxygenase) synthesis, germination (MADS FLC-like protein) and embryo development (AP2/ERF transcription factor) regulation, photosynthesis (chlorophyll a-b binding protein), cell elongation (MAP65-1a), and stress responses (metallothionein- and thaumatin-like proteins). Enzymes were assigned to 16 different metabolic pathways related to both primary and secondary metabolisms. Characterization of two candidate genes of the bixin biosynthetic pathway, BoCCD and BoOMT, showed that they belong, respectively, to the carotenoid-cleavage dioxygenase 4 (CCD4) and caffeic acid O-methyltransferase (COMT) families, and are up-regulated during seed development. It indicates their involvement in the synthesis of this commercially important carotenoid pigment in seeds of B. orellana. Most of the genes identified here are the first representatives of their gene families in B. orellana.
DOI: 10.1007/s11033-010-0234-8
PubMed: 20563648
Affiliations:
Links toward previous steps (curation, corpus...)
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De Queiroz</name></author><author><name sortKey="Lima, Livia S" sort="Lima, Livia S" uniqKey="Lima L" first="Lívia S" last="Lima">Lívia S. Lima</name></author><author><name sortKey="Hora Junior, Braz T" sort="Hora Junior, Braz T" uniqKey="Hora Junior B" first="Braz T" last="Hora-Júnior">Braz T. Hora-Júnior</name></author><author><name sortKey="Gramacho, Karina P" sort="Gramacho, Karina P" uniqKey="Gramacho K" first="Karina P" last="Gramacho">Karina P. Gramacho</name></author><author><name sortKey="Micheli, Fabienne" sort="Micheli, Fabienne" uniqKey="Micheli F" first="Fabienne" last="Micheli">Fabienne Micheli</name></author><author><name sortKey="Cascardo, Julio C M" sort="Cascardo, Julio C M" uniqKey="Cascardo J" first="Júlio C M" last="Cascardo">Júlio C M. Cascardo</name></author><author><name sortKey="Otoni, Wagner C" sort="Otoni, Wagner C" uniqKey="Otoni W" first="Wagner C" last="Otoni">Wagner C. Otoni</name></author><author><name sortKey="Gesteira, Abelmon S" sort="Gesteira, Abelmon S" uniqKey="Gesteira A" first="Abelmon S" last="Gesteira">Abelmon S. Gesteira</name></author><author><name sortKey="Costa, Marcio G C" sort="Costa, Marcio G C" uniqKey="Costa M" first="Marcio G C" last="Costa">Marcio G C. Costa</name></author></analytic><series><title level="j">Molecular biology reports</title><idno type="eISSN">1573-4978</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bixaceae (genetics)</term><term>Dioxygenases (genetics)</term><term>Expressed Sequence Tags (MeSH)</term><term>Gene Library (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Methyltransferases (genetics)</term><term>Models, Genetic (MeSH)</term><term>Multigene Family (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Proteins (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term><term>Seeds (metabolism)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Time Factors (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN (MeSH)</term><term>Banque de gènes (MeSH)</term><term>Bixaceae (génétique)</term><term>Dioxygenases (génétique)</term><term>Facteurs temps (MeSH)</term><term>Famille multigénique (MeSH)</term><term>Graines (métabolisme)</term><term>Gènes de plante (MeSH)</term><term>Methyltransferases (génétique)</term><term>Modèles génétiques (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Protéines végétales (génétique)</term><term>RT-PCR (MeSH)</term><term>Étiquettes de séquences exprimées (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Dioxygenases</term><term>Methyltransferases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bixaceae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bixaceae</term><term>Dioxygenases</term><term>Methyltransferases</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Seeds</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Graines</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Expressed Sequence Tags</term><term>Gene Library</term><term>Genes, Plant</term><term>Models, Genetic</term><term>Multigene Family</term><term>Phylogeny</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term><term>Time Factors</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Banque de gènes</term><term>Facteurs temps</term><term>Famille multigénique</term><term>Gènes de plante</term><term>Modèles génétiques</term><term>Phylogenèse</term><term>RT-PCR</term><term>Étiquettes de séquences exprimées</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The tropical tree Bixa orellana L. produces a range of secondary metabolites which biochemical and molecular biosynthesis basis are not well understood. In this work we have characterized a set of ESTs from a non-normalized cDNA library of B. orellana seeds to obtain information about the main developmental and metabolic processes taking place in developing seeds and their associated genes. After sequencing a set of randomly selected clones, most of the sequences were assigned with putative functions based on similarity, GO annotations and protein domains. The most abundant transcripts encoded proteins associated with cell wall (prolyl 4-hydroxylase), fatty acid (acyl carrier protein), and hormone/flavonoid (2OG-Fe oxygenase) synthesis, germination (MADS FLC-like protein) and embryo development (AP2/ERF transcription factor) regulation, photosynthesis (chlorophyll a-b binding protein), cell elongation (MAP65-1a), and stress responses (metallothionein- and thaumatin-like proteins). Enzymes were assigned to 16 different metabolic pathways related to both primary and secondary metabolisms. Characterization of two candidate genes of the bixin biosynthetic pathway, BoCCD and BoOMT, showed that they belong, respectively, to the carotenoid-cleavage dioxygenase 4 (CCD4) and caffeic acid O-methyltransferase (COMT) families, and are up-regulated during seed development. It indicates their involvement in the synthesis of this commercially important carotenoid pigment in seeds of B. orellana. Most of the genes identified here are the first representatives of their gene families in B. orellana.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20563648</PMID><DateCompleted><Year>2011</Year><Month>05</Month><Day>26</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1573-4978</ISSN><JournalIssue CitedMedium="Internet"><Volume>38</Volume><Issue>2</Issue><PubDate><Year>2011</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Molecular biology reports</Title><ISOAbbreviation>Mol Biol Rep</ISOAbbreviation></Journal><ArticleTitle>Unraveling new genes associated with seed development and metabolism in Bixa orellana L. by expressed sequence tag (EST) analysis.</ArticleTitle><Pagination><MedlinePgn>1329-40</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11033-010-0234-8</ELocationID><Abstract><AbstractText>The tropical tree Bixa orellana L. produces a range of secondary metabolites which biochemical and molecular biosynthesis basis are not well understood. In this work we have characterized a set of ESTs from a non-normalized cDNA library of B. orellana seeds to obtain information about the main developmental and metabolic processes taking place in developing seeds and their associated genes. After sequencing a set of randomly selected clones, most of the sequences were assigned with putative functions based on similarity, GO annotations and protein domains. The most abundant transcripts encoded proteins associated with cell wall (prolyl 4-hydroxylase), fatty acid (acyl carrier protein), and hormone/flavonoid (2OG-Fe oxygenase) synthesis, germination (MADS FLC-like protein) and embryo development (AP2/ERF transcription factor) regulation, photosynthesis (chlorophyll a-b binding protein), cell elongation (MAP65-1a), and stress responses (metallothionein- and thaumatin-like proteins). Enzymes were assigned to 16 different metabolic pathways related to both primary and secondary metabolisms. Characterization of two candidate genes of the bixin biosynthetic pathway, BoCCD and BoOMT, showed that they belong, respectively, to the carotenoid-cleavage dioxygenase 4 (CCD4) and caffeic acid O-methyltransferase (COMT) families, and are up-regulated during seed development. It indicates their involvement in the synthesis of this commercially important carotenoid pigment in seeds of B. orellana. Most of the genes identified here are the first representatives of their gene families in B. orellana.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Soares</LastName><ForeName>Virgínia L F</ForeName><Initials>VL</Initials><AffiliationInfo><Affiliation>Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Ilhéus, BA, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rodrigues</LastName><ForeName>Simone M</ForeName><Initials>SM</Initials></Author><Author ValidYN="Y"><LastName>de Oliveira</LastName><ForeName>Tahise M</ForeName><Initials>TM</Initials></Author><Author ValidYN="Y"><LastName>de Queiroz</LastName><ForeName>Talisson O</ForeName><Initials>TO</Initials></Author><Author ValidYN="Y"><LastName>Lima</LastName><ForeName>Lívia S</ForeName><Initials>LS</Initials></Author><Author ValidYN="Y"><LastName>Hora-Júnior</LastName><ForeName>Braz T</ForeName><Initials>BT</Initials></Author><Author ValidYN="Y"><LastName>Gramacho</LastName><ForeName>Karina P</ForeName><Initials>KP</Initials></Author><Author ValidYN="Y"><LastName>Micheli</LastName><ForeName>Fabienne</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Cascardo</LastName><ForeName>Júlio C M</ForeName><Initials>JC</Initials></Author><Author ValidYN="Y"><LastName>Otoni</LastName><ForeName>Wagner C</ForeName><Initials>WC</Initials></Author><Author ValidYN="Y"><LastName>Gesteira</LastName><ForeName>Abelmon S</ForeName><Initials>AS</Initials></Author><Author ValidYN="Y"><LastName>Costa</LastName><ForeName>Marcio G C</ForeName><Initials>MG</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>06</Month><Day>19</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Mol Biol Rep</MedlineTA><NlmUniqueID>0403234</NlmUniqueID><ISSNLinking>0301-4851</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 1.13.11.-</RegistryNumber><NameOfSubstance UI="D049308">Dioxygenases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 1.13.11.-</RegistryNumber><NameOfSubstance UI="C431939">carotenoid cleavage dioxygenase 1</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.1.1.-</RegistryNumber><NameOfSubstance UI="D008780">Methyltransferases</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D031212" MajorTopicYN="N">Bixaceae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D049308" MajorTopicYN="N">Dioxygenases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020224" MajorTopicYN="Y">Expressed Sequence Tags</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015723" MajorTopicYN="N">Gene Library</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008780" MajorTopicYN="N">Methyltransferases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008957" MajorTopicYN="N">Models, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012639" MajorTopicYN="N">Seeds</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013997" MajorTopicYN="N">Time Factors</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2010</Year><Month>05</Month><Day>06</Day></PubMedPubDate><PubMedPubDate 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